PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G30420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 270aa    MW: 28822.4 Da    PI: 6.9975
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G30420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.82e-15165201135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  OPUNC03G30420.1 165 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 201
                      **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-93267IPR010399Tify domain
PROSITE profilePS5132015.5483267IPR010399Tify domain
PfamPF062007.5E-133466IPR010399Tify domain
PfamPF062035.5E-1694134IPR010402CCT domain
PROSITE profilePS5101713.49394136IPR010402CCT domain
SMARTSM004011.3E-10159213IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-10162212No hitNo description
Gene3DG3DSA:3.30.50.107.8E-14163203IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.32E-13165211No hitNo description
PROSITE patternPS003440165192IPR000679Zinc finger, GATA-type
PfamPF003203.8E-13165201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAAEPPADGR DPPADDGAAG DSGGGGAAEA LLSAASEQLT LVYQGEVYVF DPVPPQKVQA  60
VLLVLGGSDM PPGLVSMAVP STFDEKSTTV AARRVASLMR FREKRKERCF DKKIRYSVRK  120
EVAQKMKRRK GQFAGRADFG DGSCSSAPCG STANGEDDHI RETHCQNCGI SSRLTPAMRR  180
GPAGPRSLCN ACGLMWANKG TLRSPLNAPK MTAQHPADLS KMGDTDDSKS NLHAEHNQTT  240
TKTDSEMVPE QEQKADVLPP TKEEDSMATS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.11e-171PREDICTED: GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-173GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0E0KIP90.0A0A0E0KIP9_ORYPU; Uncharacterized protein
STRINGLOC_Os03g52450.11e-171(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-56ZIM-LIKE 2